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Published works
 

Technical Manuals:
Methods in Virology. Textbook. Editor: Atabekov IG. Published in MGU, 2002. 1st edition: 3000 copies. In Russian.
Chapter 4. Viral nucleic acids and protein: preparative methods. Pages 113-141.

Baranova AV. Polimerase chain reaction. P113-121.
Skoblov MY, Baranova AV. DNA sequencing: Sanger method P121-129
Ivanov DV, Baranova AV. Hybridization of nucleic acids. P. 129-141
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Chronic lymphocytic leukemia and related papers

  1. Skoblov M, Shakhbazov K, Oshchepkov D, Ivanov D, Guskova A, Ivanov D, Rubtsov P, Prasolov V, Yankovsky N, Baranova A. Human RFP2 gene promoter: Unique structure and unusual strength. Biochem Biophys Res Commun. 2006 Apr 14;342(3):859-66.
  2. Ancha Baranova, Marianne Hammarsund, Dmitry Ivanov, Mikhail Skoblov, Olle Sangfelt, Martin Corcoran, Tatiana Borodina, Natalia Makeeva, Anna Pestova, Tatiana Tyazhelova, Svetlana Nazarenko, Francesco Gorreta, Tariq Alsheddi, Karen Schlauch, Eugene Nikitin, Bagrat Kapanadze, Dmitry Shagin, Andrey Poltaraus, Andrey Ivanovich Vorobiev, Eugene Zabarovsky, Sergey Lukianov, Vikas Chandhoke, Rachel Ibbotson, David Oscier, Stefan Einhorn, Dan Grander and Nick Yankovsky. Distinct organization of the candidate tumor supperssor gene RFP2 in human and mouse: multiple mRNA isoforms in both species and human-specific antisense transcript RFP2OS. Gene. 2003 Dec 4;321:103-12.
  3. Tiazhelova TV, Ivanov DV, Baranova AV, Yankovsky NK. Search for transcribed segments in the region of q14.3 of human chromosome 13 in silico. Genetika. 2004 Mar;40(3):422-6.
    van Everdink WJ, Baranova A, Lummen C, Tyazhelova T, Looman MWG, Ivanov D, Verlind E, Pestova A, Faber H, van der Veen AY, Yankovsky N, Vellenga E, Buys CHCM. RFP2, c13ORF1 and FAM10aaA4 are the most likely tumor suppressor gene candidates for B-cell chronic lymphocytic leukemia. Cancer Genetics and Cytogenetics,
  4. Ancha Baranova, Marianne Hammarsund, Dmitry Ivanov, Mikhail Skoblov, Olle Sangfelt, Martin Corcoran, Tatiana Borodina, Natalia Makeeva, Anna Pestova, Tatiana Tyazhelova, Svetlana Nazarenko, Francesco Gorreta, Tariq Alsheddi, Karen Schlauch, Eugene Nikitin, Bagrat Kapanadze, Dmitry Shagin, Andrey Poltaraus, Andrey Ivanovich Vorobiev, Eugene Zabarovsky, Sergey Lukianov, Vikas Chandhoke, Rachel Ibbotson, David Oscier, Stefan Einhorn, Dan Grander and Nick Yankovsky. Distinct organization of the candidate tumor supperssor gene RFP2 in human and mouse: multiple mRNA isoforms in both species and human-specific antisense transcript RFP2OS. Gene. 2003 Dec 4;321:103-12.
  5. Ivanov DV, Tyazhelova TV, Lemonnier L, Kononenko N, Pestova AA, Prevarskaya N, Skryma R, Panchin YV, Yankovsky NK, Baranova AV. A new human gene KCNRG encoding potassium channel regulating protein is a cancer suppressor gene candidate located in 13q14.3 FEBS Letters 2003 Mar 27;539(1-3):156-60.
  6. van Everdink WJ, Baranova A, Lummen C, Tyazhelova T, Looman MWG, Ivanov D, Verlind E, Pestova A, Faber H, van der Veen AY, Yankovsky N, Vellenga E, Buys CHCM. RFP2, c13ORF1 and FAM10A4 are the most likely tumor suppressor gene candidates for B-cell chronic lymphocytic leukemia Cancer Genetics and Cytogenetics, 2003 Oct 1;146(1):48-57.
  7. Baranova AV, Ivanov DV, Tiazhelova TV, Iankovskii NK. Structural-functional characteristics of the 13q14 region of the human genome in the search for potential tumor suppressor genes. Mol Biol (Mosk). 2004 Mar-Apr;38(2):203-12. Review.
  8. Tiazhelova TV, Ivanov DV, Makeeva NV, Kapanadze BI, Nikitin EA, Semov AB, Sangfeldt O, Grander D, Vorob'ev AI, Einhorn S, Iankovskii NK, Baranova AV. Transcription map of the 13q14 region, frequently deleted in B-cell chronic lymphocytic leukemia patients. Genetika. 2001 Nov;37(11):1530-7.
  9. Nikitin EA, Baranova AV, Aseeva EA, Domracheva EV. Molecular and cytogenetic aberrations in chronic lymphocytic leukaemia. Haematology and transfusiology, 2000, 45 (3): 61-63.
  10. Kapanadze B, Kashuba V, Baranova A, Rasool O, van Everdink W, Liu Y, Syomov A, Corcoran M, Poltaraus A, Brodyansky V, Syomova N, Kazakov A, Ibbotson R, van den Berg A, Gizatullin R, Fedorova L, Sulimova G, Zelenin A, Deaven L, Lehrach H, Grander D, Buys C, Oscier D, Zabarovsky ER, Yankovsky N. A cosmid and cDNA fine physical map of a human chromosome 13q14 region frequently lost in B-cell chronic lymphocytic leukemia and identification of a new putative tumor suppressor gene, Leu5. FEBS Lett 1998 Apr 17; 426(2):266-270. pdf
  11. Yie Liu, Martin Corcoran, Omid Rasool, Ganka Ivanova, Rachel Ibbotson, Dan Grander, Arati Iyengar, Anna Baranova, Vladimir Kashuba, Mats Merup, Xiushan Wu, Anne Gardiner, Roman Mullenbach, Andrew Poltaraus, Anna Linda Hultstrom, Gunnar Julisson, Robert Chapman, Mary Tiller, Gosta Gahrton, Nick Yankovsky, Eugene Zabarovsky, Stefan Einhorn, David Oscier. Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia. Oncogene 1997 15, 2463-2473
  12. Baranova AV, Ivanov DV, Makeeva NV, Nikitin EA, Sangfelt O, Borodina TA, Kapanadze BI, Tyazhelova TV, Corcoran M, Fyodorova LI, Shagin DV, Nemtsova MV, Polataraus AB, Zelenin AV, Zaletaev DV, Lukyanov SA, Grander D, Einhorn S, Yankovsky NK. Modern strategy of a search for putative tumor suppressor genes: cloning of Leu5 gene involved in CLL as an example. Haematology and transfusiology, 2000, 45 (3): 15-19.
  13. Kapanadze BI, Brodianskii VM, Semov AB, Baranova AV, Sulimova GE, Aitova SS, Udina IG, Ptitsyna SN, Sal'nikova LE, Chudinov OS, Borbiev TE, Kashuba VV, Gizatullin R, Zabarovskaia V, Zabarovskii ER, Fedorova LI, Zelenin AV, L'iu I, Rasul O, Einkhorn S, van Everdink W, van den Berg A, Buys C, Corcoran M, Iankovskii NK, et al. Cosmid contig and cDNA map of the 13q14 region is frequently deleted in human B-cell chronic lymphocytic leukemia. Mol Biol (Mosk). 1997 May-Jun; 31(3):515-9.
  14. Kapanadze BI, Brodianskii VM, Baranova AV, Sevat'ianov SIu, Fedorova ND, Kurskov MM, Kostina MA, Mironov AA, Sineokii SP, Zakhar'ev VM, Grafodatskii AS, Modianov NN, Iankovskii NK. Cosmid libraries containing DNA from human chromosome 13. Genetika 1996 Mar;32(3):331-40
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Tumorigenesis related papers (non-CLL)

  1. Kozlov AP, Galachyants YP, Duhovlinov IV, Samusik NA, Baranova AV, Polev DE, Krukovskaja LL. Evolutionarily new sequences expressed in tumors. Infect Agent Cancer. 2006 Dec 25;1(1):8
  2. Baranova A, Gowder S, Naouar S, King S, Schlauch K, Jarrar M, Ding Y, Cook B, Chandhoke V, Christensen A. Expression profile of ovarian tumors: distinct signature of Sertoli-Leydig cell tumor, Int J Gynecol Cancer. 2006 Nov-Dec;16(6):1963-72.
  3. Semova N, Kapanadze B, Corcoran M, Kutsenko A, Baranova A, Kisselev L, Semov A. Molecular cloning, structural analysis, and expression of human IRLB, MYC promoter-binding protein: new DENN domain containing protein family emerges. Genomics, 2003 Genomics. 2003 Sep;82(3):343-54.
  4. Borodina TA, Ivanov DV, Khusnutdinova EK, Spitsyn VA, Baranova AV, Iankovskii NK. A new pentanucleotide STR-marker, located in the intron of the ING1 tumor suppressor gene and its allelic polymorphism. Genetika. 2001 Jan;37(1):117-9.
  5. Baranova AV, Ivanov DV, Makeeva NV, Corcoran M, Nikitin EA, Borodina TA, Poltaraus AB, Glinshchikova OA, Sudarikov AB, Oscier D, Iankovskii NK. Genomic organization of the suppressor gene for tumor growth ING1. Mol Biol (Mosk). 2000 Mar-Apr;34(2):263-9.
  6. Udina IG, Baranova AV, Kompaniitsev AA, Sulimova GE. Evolutionarily-conserved gene CKAP2, located in region 13q14.3 of the human genome, is frequently rearranged in various tumors. Genetika. 2001 Jan;37(1):120-3.
  7. Baranova AV, Iankovskii NK. Tumor suppressor genes. Mol Biol (Mosk). 1998 Mar-Apr;32(2):206-18. Review.
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TUMOR MARKERS

  1. Sikaroodi M, Y.Galachiantz, Baranova A. Tumor Markers: The Potential of “Omics” Approach. Current Drug Targets, thematic issue "Functional Genomics - Special Aspects", invited review, in press
  2. Krukovskaja L, Baranova A, Tyazhelova T, Polev D, Kozlov A.P. Experimental Study of Human Expressed Sequences Identified In Silico as Tumor Specific. Tumor Biology, 2005. Jan-Feb;26(1):17-24.
  3. AV Baranova, A.V.Lobashev, D.V. Ivanov, L.L. Krukovskaya, N.K. Yankovsky, A.P. Kozlov. In silico screening for tumour-specific expressed sequences in human genome. FEBS Letters, 2001, V. 508 (1) P. 143-148. pdf
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Bioinformatics and Comparative Genomics

  1. Stepanova M, Tiazhelova T, Skoblov M, Baranova A. Potential regulatory SNPs in promoters of human genes: A systematic approach. Molecular and Cellular Probes, 2006, May (e-pub ahead of print)
  2. Klimov D, Skoblov M, Ryazantsev A, Tyazhelova T, Baranova A. In silico search for natural antisense transcripts reveals their differential expression in human tumors. J Bioinform Comput Biol. 2006 Apr;4(2):515-21.
  3. Stepanova M, Tiazhelova T, Skoblov M, Baranova A. A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas. Bioinformatics, 2005 Feb 4;
  4. Andrei Lobashev, Mikhail Skoblov, Maria Stepanova, Igor Moiseev, Linda Dickerson, Ancha Baranova, Andrei Mironov, Nick Yankovsky. Single nucleotide polymorphism density distribution in the human genome as seen in public databases: possibility of gene set comparisons but not comparisons of genomic regions. Biophysics (Moscow). Vol. 48, Suppl. 1, 2003. 81-84.
  5. A.A. Guskova, A.V. Zagurny, M. Skoblov, A. Baranova, V. Andronova, N.Yankovsky, G.Galegov, Yu. Skoblov. Molecular analysis of HPV type I thymidine kinase. Mol Biol (Mosk). Jan-Feb;39(1):155-8.
  6. Makeeva NV, Pestova AA, Borodina TA, Madera DA, Ivanov DV, Stepanova EV, Baranova AV. Fundamental and applied aspects of vertebrate comparative genomics. Genetika, 2003, Review
  7. Tyazhelova TV, Ivanov DV, Baranova AV, Yankovsky NK. In silico search for transcribed sequences in human chromosome 13 area q14.3 Genetika, 2003,
  8. Baranova AV, Lobashev A.V., Ivanov D.V., Krukovskaya L.L., Zinchenko V.V., Shestakov S.V., Kozlov A.P., Yankovsky N.K. A computer differential display reveals genes with with specific expression patterns: from potential human tumor markers down to plant stress-resistance genes. // In Proc. Third International conference on bioinformatics of genome regulation and structure. (BGRS 2002), vol. 3, July 14-20, Novosibirsk 2002 P.80-81.
  9. Bagrat Kapanadze, Natalia Makeeva, Martin Corcoran, Niclas Jareborg, Marianne Hammarsund, Ancha Baranova, Eugene Zabarovsky, Olga Vorontcova, Mats Merup, Gosta Gahrton, Nick Yankovsky, Stefan Einhorn, David Oscier, Dan Grander, Olle Sangfelt. Comparative sequence analysis of a region on human chromosome 13q14, frequently deleted in B-cell chronic lymphocytic leukemia and its homologous region on mouse chromosome 14. Genomics, 2000, V. 70., P. 327-334. pdf
  10. Makeeva NV, Pestova AA, Borodina TA, Madera DA, Ivanov DV, Stepanova EV, Baranova AV. Fundamental and applied aspects of vertebrate comparative genomics. Russian Journal of Genetics, 2003, 39 (9): 973-985 SEP 2003 Review
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Metabolic Syndrome (obesity, insulin resistance and non-alcoholoic fatty liver disease)

  1. Younossi ZM, Gorreta F, Ong J, Schlauch K, Del Giacco L, Elariny H, Van Meter A, Younoszai A, Goodman Z, Baranova A, Christensen A, Grant G, Chandhoke V. Hepatic Gene Expression in Patients with Obesity-related Non-Alcoholic Steatohepatitis. Liver International, Liver Int. 2005 Aug;25(4):760-71
  2. Baranova A, Gowder SJ, Schlauch K, Elariny H, Collantes R, Afendy A, Ong JP, Goodman Z, Chandhoke V, Younossi ZM. Gene expression of leptin, resistin, and adiponectin in the white adipose tissue of obese patients with non-alcoholic Fatty liver disease and insulin resistance. Obes Surg. 2006 Sep;16(9):1118-25.
  3. A Baranova; R Collantes; S Gowder; H Elariny; K Schlauch; A Younoszai; S King; M Randhawa; S Pusulury; T Alsheddi; J Ong; L Martin; V Chandhoke; ZM Younossi. Obesity-related Differential Gene Expression in the Visceral Adipose Tissue, Obesity Surgery, 2005, V. 15, P. 58-65
  4. Younossi ZM, Baranova A, Ziegler K, Del Giacco L, Schlauch K, Born TL, Elariny H, Gorreta F, VanMeter A, Younoszai A, Ong JP, Goodman Z, Chandhoke V. A genomic and proteomic study of the spectrum of nonalcoholic fatty liver disease. Hepatology. 2005 Sep;42(3):665-74.
  5. Ancha Baranova, Karen Schlauch, Shobha Gowder, Rochelle Collantes, Vikas Chandhoke and Zobair M. Younossi “Microarray technology in the study of obesity and non-alcoholic fatty liver disease”, Liver International, 2005 Dec;25(6):1091-6. Review
  6. Baranova A, Younossi ZM. “Adipokines in Non-alcoholic Fatty Liver Diseases” In: Adipose tissue and adipokines in health and disease. Editors: Giamila Fantuzzi and Theodore Mazzone. Humana Press, in press. (Book chapter)
  7. Baranova A, Liotta L, Petricoin E, Younossi ZM. “The Role of Genomics and Proteomics Technologies in Studying Non-Alcoholic Fatty Liver Disease”. In: “Liver clinic”, Clinics of North America Series, in press (Book chapter)
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Pannexins

  1. Oxana Litvin, Anya Tiunova, Yvette Connell-Alberts, Yury Panchin and Ancha Baranova. “What is hidden in the pannexin treasure trove: the sneak peek and the guesswork”. Journal of Cellular and Molecular Medicine, in press
  2. Abeele FV, Bidaux G, Gordienko D, Beck B, Panchin YV, Baranova A, Ivanov DV, Skryma R, Prevarskaya N. “Functional implications of calcium permeability of the channel formed by Pannexin 1”. Journal of Cell Biology, accepted, in press
  3. Ancha Baranova, Dmitry Ivanov, Nadezda Petrash, Anya Pestova, Mikhail Skoblov, Ilya Kelmanson, Dmitry Shagin, Svetlana Nazarenko, Elena Geraymovych, Oxana Litvin, Anya Tiunova, Timothy L. Born, Natalia Usman, Dmitry Staroverov, Sergey Lukyanov, Yury Panchin. The mammalian pannexin family is homologous to the invertebrate innexin gap junction proteins. Genomics. 2004 Apr;83(4):706-16.


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